POTENSI ANTIINFLAMASI SENYAWA BIOAKTIF DARI SYZYGIUM MYRTIFOLIUM: STUDI MOLECULAR DOCKING BERTARGET COX-2

  • Refsya Azanti Putri Institut Teknologi Sumatera
  • Muhammad Yogi Saputra Institut Teknologi Sumatera
  • Nia Natalia Enggelina Institut Teknologi Sumatera
  • Liska Windasari Institut Teknologi Sumatera
  • Atthar Luqman Ivansyah Institut Teknologi Bandung
Keywords: Syzygium myrtifolium, anti-inflammatory, COX-2, molecular docking, bioactive compounds

Abstract

Chronic inflammation contributes significantly to various degenerative diseases, with Cyclooxygenase-2 (COX-2) being a central target for anti-inflammatory drug development. Syzygium myrtifolium, a native Indonesian plant, is known to contain a variety of bioactive compounds with pharmacological potential. This study aims to investigate the anti-inflammatory activity of S. myrtifolium active compounds on COX-2 using a molecular docking approach. The tested compounds include avicularin, betulinic acid, ursolic acid, and two flavanones modeled and docked against the COX-2 protein (PDB ID: 5F19) using YASARA. Docking simulations were performed using YASARA software via a blind docking method and visualized through Discovery Studio. The results revealed that four compounds demonstrated stronger binding affinity than celecoxib, with (2S)-7-Hydroxy-5-methoxy-6,8-dimethylflavanone showing the most stable interaction with 9.0450 kcal/mol binding energy. Toxicity prediction suggests these compounds are generally safe based on LD50 values and toxicity class. These findings support the potential of S. myrtifolium as a natural source of COX-2 inhibitors.

Author Biographies

Muhammad Yogi Saputra, Institut Teknologi Sumatera

chemistry program study

Nia Natalia Enggelina, Institut Teknologi Sumatera

chemistry

Liska Windasari, Institut Teknologi Sumatera

chemistry

Atthar Luqman Ivansyah, Institut Teknologi Bandung

chemistry

References

Amanah, D., Manalu, R. T., Sholikha, M., Syafriana, V., & Yasman, Y. (2023). Molecular Docking of Active Compounds of Syzygium myrtifolium Walp. Leaves on Leukotriene A4 Hydrolase Receptors as Colorectal Anticancer. Jurnal Kimia Sains Dan Aplikasi, 26(5), 194–203. https://doi.org/10.14710/jksa.26.5.194-203

Araújo, P. H. F., Ramos, R. S., da Cruz, J. N., Silva, S. G., Ferreira, E. F. B., de Lima, L. R., Macêdo, W. J. C., Espejo-Román, J. M., Campos, J. M., & Santos, C. B. R. (2020). Identification of potential COX-2 inhibitors for the treatment of inflammatory diseases using molecular modeling approaches. Molecules, 25(18). https://doi.org/10.3390/molecules25184183

Bäck, M., Yurdagul, A., Tabas, I., Öörni, K., & Kovanen, P. T. (2019). Inflammation and its resolution in atherosclerosis: mediators and therapeutic opportunities. In Nature Reviews Cardiology (Vol. 16, Issue 7, pp. 389–406). Nature Publishing Group. https://doi.org/10.1038/s41569-019-0169-2

Deng, Z., & Liu, S. (2021). Inflammation-responsive delivery systems for the treatment of chronic inflammatory diseases. Drug Delivery and Translational Research, 11(4), 1475–1497. https://doi.org/10.1007/s13346-021-00977-8

Hawash, M., Jaradat, N., Sabobeh, R., Abualhasan, M., & Qaoud, M. T. (2023). New Thiazole Carboxamide Derivatives as COX Inhibitors: Design, Synthesis, Anticancer Screening, In Silico Molecular Docking, and ADME Profile Studies. ACS Omega, 8(32), 29512–29526. https://doi.org/10.1021/acsomega.3c03256

Jena, S., Ray, A., Sahoo, A., Das, P. K., Dash, K. T., Kar, S. K., Nayak, S., & Panda, P. C. (2021). Chemical Composition and Biological Activities of Leaf Essential Oil of Syzygium myrtifolium from Eastern India. Journal of Essential Oil-Bearing Plants, 24(3), 582–595. https://doi.org/10.1080/0972060X.2021.1947897

Krewski, D., Acosta, D., Andersen, M., Anderson, H., Bailar, J. C., Boekelheide, K., Brent, R., Charnley, G., Cheung, V. G., Green, S., Kelsey, K. T., Kerkvliet, N. I., Li, A. A., McCray, L., Meyer, O., Patterson, R. D., Pennie, W., Scala, R. A., Solomon, G. M., … Zeise, L. (2010). Toxicity testing in the 21st century: A vision and a strategy. In Journal of Toxicology and Environmental Health - Part B: Critical Reviews (Vol. 13, Issues 2–4, pp. 51–138). https://doi.org/10.1080/10937404.2010.483176

Lucido, M. J., Orlando, B. J., Vecchio, A. J., & Malkowski, M. G. (2016). Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry, 55(8), 1226–1238. https://doi.org/10.1021/acs.biochem.5b01378

Mariska, S., Zaki, M., Rahmadi, A., Hanifa, M., Hasna, R., Azara, S., Irawan, N., Putri, R. A., & Saputra, M. Y. (2024). Antibacterial Potency of Bioactive Compounds from Areca catechu Nuts: A Molecular Docking Study Targeting 8H1B. Helium: Journal of Science and Applied Chemistry, 04, 13–18. https://journal.unpak.ac.id/index.php/he_jsac

Oktaviani, N. P. S., Ivansyah, A. L., Saputra, M. Y., Handayani, N., Fadylla, N., & Wahyuningrum, D. (2023). Potential application of bisoprolol derivative compounds as antihypertensive drugs: Synthesis and in silico study. Royal Society Open Science, 10(12). https://doi.org/10.1098/rsos.231112

Peregrym, K., Szczukowski, Ł., Wiatrak, B., Potyrak, K., Czyżnikowska, Ż., & Świątek, P. (2021). In vitro and in silico evaluation of new 1,3,4-oxadiazole derivatives of pyrrolo[3,4-d]pyridazinone as promising cyclooxygenase inhibitors. International Journal of Molecular Sciences, 22(17). https://doi.org/10.3390/ijms22179130

Shifeng, P., Boopathi, V., Murugesan, M., Mathiyalagan, R., Ahn, J. C., Xiaolin, C., Yang, D. U., Kwak, G. Y., Kong, B. M., Yang, D. C., Kang, S. C., & Hao, Z. (2022). Molecular Docking and Dynamics Simulation Studies of Ginsenosides with SARS-CoV-2 Host and Viral Entry Protein Targets. Natural Product Communications, 17(11). https://doi.org/10.1177/1934578X221134331

Published
2025-06-30