ANALISIS POTENSIAL Alpinia galanga MENGGUNAKAN JEJARING FARMAKOLOGI MELALUI ANALISIS PENGAYAAN GENE ONTOLOGY DAN KEGG (KYTO ENCYCLOPEDIA OF GENE AND GENOMES) SEBAGAI ANTIDIABETES
Abstract
Alpinia galanga L., is a family of Zingiberaceae that has been used traditionally in various medicinal practices due to its therapeutic properties. With this, this research aims to identify the potential content of Alpinia galanga metabolite compounds as one of the potential alternative therapies in cases of diabetes mellitus and several other disorders. In this study, in silico methods were used, namely pharmacological networks and also Gene Ontology and KEEG pathway enrichment analysis which revealed 28 metabolite compounds that have links to plants and diseases to be studied and also revealed the enrichment of key molecular functions such as catalytic activity, protein kinase activity, and small molecule binding, indicating their regulatory and catalytic properties. In addition, KEGG (Kyto Encyclopedia of Genes and Genomes) pathway analysis highlighted its involvement in signaling pathways associated with glucose homeostasis, cancer, and hormone response. Examination of cellular component terms revealed the subcellular localization and potential interactions of A. galanga compounds in cellular compartments such as the cytoplasm, plasma membrane, and cell periphery. The results showed that out of 28 metabolite compounds, 1 metabolite compounds in A. galanga, namely 1'S-1'- acetosxychavicol, have the potential for treatment in diabetes mellitus cases and show the diverse pharmacological properties of A. galanga, which has implications for its potential in the development of new therapies targeting various diseases and disorders.
References
Alghifari, M.R., Jamil, A.S., Muchlisin, M.A. Potential of Secondary Metabolite of Jasminum sambac as Diabetes Mellitus Medicine by Molecular Docking Method. Proceedings of International Pharmacy Ulul Albab Conference and Seminar (PLANAR). 2023, 3, 93-102.
Alkandahri, M.Y., Sujana, D., Hasyim, D.M., Shafirany, M.Z., Sulastri. L., Arfania, M., et al. Antidiabetic Activity of Extract and Fractions of Castanopsis costata Leaves on Alloxan- Phcogj.com induced Diabetic Mice. Pharmacognosy Journal. 2021, 13(6)Suppl, 1589-1593.
Anggraeni, A.D., Putri, N.Y.F., Amalia, S.D., dan Muchlisin, M.A. Bioavailability and Molecular Docking Prediction of Secondary Metabolite of Curcuma zedoaria as Potential Mpro SARS Cov-2 Inhibitor. Medical Sains: Jurnal Ilmiah Kefarmasian. 2023, 8(4), 1345-1354.
Arfania, M., Alkandahri, M.Y., Frianto, D., Amal, S., Mardiana, L.A., Abriyani, E., dan Hidayah, H. Edukasi Pentingnya Kepatuhan Minum Obat dalam Keberhasilan Terapi Diabetes Melitus. Jurnal Peduli Masyarakat. 2022, 4(3), 463-466.
Carbon, S., Douglass, E., Dunn, N., Good, B., Harris, N. L., Lewis, S.E., et al. The Gene Ontology Resource: 20 Years and Still Going strong. Nucleic Acids Research. 2019, 47(D1), D330-D338.
Chaiyana, W., Sriyab, S., and Okonogi, S. Enhancement of Cholinesterase Inhibition of Alpinia galanga (L.) Willd. Essential Oil by Microemulsions. Molecules (Basel, Switzerland). 2022, 27(10), 1-13.
Chudiwal, A.K., Jain, D.P., and Somani, R.S. Alpinia galanga Willd.- An overview on phyto-pharmacological properties. Indian Journal of Natural Products and Resources. 2010, 1(2), 143-149.
Daina, A., Michielin, O., and Zoete, V. Swiss Target Prediction: Updated Data and New Features for Efficient Prediction of Protein Targets of Small Molecules. Nucleic Acids Research. 2019, 47(W1), W357-W3664.
Daina, A., and Zoete, V.A BOILED-Egg to Predict Gastrointestinal Absorption and Brain Penetration of Small Molecules. Chem Med Chem. 2016, 1117-1121.
Fojtík, P., Beckerová, D., Holomková, K., Šenfluk, M., and Rotrekl, V. Both Hypoxia-Inducible Factor 1 and MAPK Signaling Pathway Attenuate PI3K/AKT via Suppression of Reactive Oxygen Species in Human Pluripotent Stem Cells. Frontiers in Cell and Developmental Biology. 2021, 8, 1-18.
Hardianto, D. Telaah Komprehensif Diabetes Melitus: Klasifikasi, Gejala, Diagnosis, Pencegahan, dan Pengobatan. Jurnal Bioteknologi dan Biosains Indonesia (JBBI). 2021, 7(2), 304-317.
Hasan, P.H.S., Fatimawali, Bodhi, W. Uji Daya Hambat Ekstrak Rimpang Lengkuas Putih (Alpinia galanga L. Swartz) Terhadap Pertumbuhan Bakteri Klebsiella pneumoniae Isolat Sputum pada Penderita Pneumonia Resisten Antibiotik Seftriakson. Pharmacon. 2019, 8(1), 22-29.
Hur, B., Kang, D., Lee, S., Moon, J.H., Lee, G., and Kim, S. Venn-diaNet: venn Diagram-Based Network Propagation Analysis Framework for Comparing Multiple Biological Experiments. BMC Bioinformatics. 2019, 20(Suppl 23), 1-12.
Ibrahim, S. Alpinia galanga Extract Inhibits MCF-7/HER2+ Cells by Inducing Apoptosis. Journal of Science and Technology Research for Pharmacy. 2022, 1(2), 72-77.
Kai, K., Han-Bing, J., Bing-Lin, C., and Shu-Jun, Z. Network Pharmacology, Molecular Docking and Experimental Verification Help Unravel Chelerythrine's Potential Mechanism in The Treatment of Gastric Cancer. Heliyon. 2023, 9(7), e17393.
Kanehisa, M., Furumichi, M., Sato, Y., Kawashima, M., and Ishiguro-Watanabe, M. KEGG for Taxonomy-Based Analysis of Pathways and Genomes. Nucleic Acids Research. 2023, 51(D1), D587-D592.
Lena, N., Jamil, A.S., Muchlisin, M.A., dan Almutahrihan, I.F. Analisis Jejaring Farmakologi Tanaman Jati Belanda (Guazuma ulmifolia Lamk.) Sebagai Imunomodulator. Journal of Islamic Pharmacy. 2023, 8(1), 1-6.
Li, C., and Xu, J. Feature Selection With the Fisher Score Followed by the Maximal Clique Centrality Algorithm can Accurately Identify the Hub Genes of Hepatocellular Carcinoma. Scientific Reports. 2019, 9(1), 1-11.
Liangan, R., Kairupan, C., dan Durry, M. Pengaruh Pemberian Ekstrak Lengkuas (Alpinia galanga) Terhadap Gambaran Histologik Payudara Mencit (Mus musculus) yang Diinduksi Benzo(a)pyrene. Journal E-Biomedik. 2015, 3(1), 480-485.
Liu, W., Liu, J., and Rajapakse, J.C. Gene Ontology Enrichment Improves Performances of Functional Similarity of Genes. Scientific Reports. 2018, 8(1), 1-12.
Mahanthesh, M.T., Ranjith, D., Yaligar, R., Jyothi, R., Narappa, G., and Ravi, M.V. Swiss ADME Prediction of Phytochemicals Present in Butea monosperma (Lam.) Taub. Journal of Pharmacognosy and Phytochemistry. 2020, 9(3), 1799-1809.
Mazaheri, M., Shahdadi, V., and Boron, A. N. Molecullar and Biochemical Effect of Alcohlic Extract of Alpinia galanga on Rat Spermatogenesis Process. Iranian Journal of Reproductive Medicine. 2014, 12(11), 765-770.
Oh, K.K., Adnan, M., and Cho, D.H. Network Pharmacology Approach to Decipher Signaling Pathways Associated with Target Proteins of NSAIDs Against COVID-19. Scientific Reports. 2021, 11(1), 1-15.
Putra, W.E., Sustiprijatno, Hidayatullah, A., Widiastuti, D., Heikal, M. F., and Salma, W.O. Virtual Screening of Natural Alpha-Glucosidase Inhibitor from Alpinia galanga Bioactive Compounds as Anti-diabetic Candidate. Journal of Microbiology, Biotechnology and Food Sciences. 2023, 13(1), 1-5.
Retta, E., Kusumajaya, H., dan Arjuna. Faktor-Faktor yang Berhubungan dengan Pemilihan Pengobata Herbal pada Pasien Diabetes Melitus. Jurnal Penelitian Perawat Profesional. 2023, 5(4), 1541-1552.
Ripa, I., Andreu, S., López-Guerrero, J.A., and Bello-Morales, R. Membrane Rafts: Portals for Viral Entry. Frontiers in Microbiology. 2021, 12, 1-18.
Safran, M., Rosen, N., Twik, M., BarShir, R., Stein, T. I., Dahary, D., et al. The GeneCards Suite. Practical Guide to Life Science Databases. 2022, 27-56.
Stelzer, G., Rosen, N., Plaschkes, I., Zimmerman, S., Twik, M., Fishilevich, S., et al. The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses. Current Protocols in Bioinformatics. 2016, 54, 1.30.1-1.30.33.
Szklarczyk, D., Gable, A.L., Nastou, K.C., Lyon, D., Kirsch, R., Pyysalo, S., et al. The STRING Database in 2021: Customizable Protein-Protein Networks, and Functional Characterization of User-uploaded Gene/measurement Sets. Nucleic Acids Research. 2021, 49(D1), D605-D612.
Verma, R.K., Mishra, G., Singh, P., Jha, K.K., and Khosa, R.L. Anti-diabetic Activity of Methanolic Extract of Alpinia galanga Linn. aerial Parts in Streptozotocin Induced Diabetic Rats. Ayu. 2015, 36(1), 91-95.
Widiasari, K.R., Wijaya, I.M.K., Suputra, P.A. Diabetes Melitus Tipe 2: Faktor Risiko, Diagnosis, dan Tatalaksana. Ganesha Medicina Journal. 2021, 1(2), 114-120.
Zhang, R., Zhu, X., Bai, H., and Ning, K. Network Pharmacology Databases for Traditional Chinese Medicine: Review and Assessment. Frontiers in Pharmacology. 2019, 10, 1-14.
Copyright (c) 2024 Dwi Hanif Muluqul Fath, Muhammad Artabah Muchlisin, Ahmad Shobrun Jamil
This work is licensed under a Creative Commons Attribution 4.0 International License.